Questions and postings pertaining to the usage of ImageMagick regardless of the interface. This includes the command-line utilities, as well as the C and C++ APIs. Usage questions are like "How do I use ImageMagick to create drop shadows?".
I can confirm the difference using IM 6.9.2.10 Q16 and 6.8.9.9 Q16 Mac OSX Snow Leopard. I know there was some partial transparency blending changes not too long ago, but do not know if this is related. The change seems to have occurred between 6.9.1.6 and 6.9.1.7.
It appears to be a transient problem which fixed in recent releases of ImageMagick. The current release, ImageMagick 6.9.2-10, returns similar results to your first image, res1.png. The normalized RMSE metric for 6.9.2-10 vs 6.9.2-7 is 5.8503e-06, whereas for 6.8.9-9 vs 6.9.2-7, we get an RMSE of 0.0323784.